AT2G20540.1
0.51464799999999999436
<html><body><title>AT2G20540.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222054001000i/AT2G20540.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222054001000i/AT2G20540.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222054001000i/AT2G20540.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120990001000i">AT1G09900.1</a></td><td>0.956828</td><td>pentatricopeptide (PPR) repeat-containing protein</td><td>OMAT1P003430</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122990001000i">AT1G29900.1</a></td><td>0.953622</td><td>CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)</td><td>OMAT1P010470</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420299001000i">AT4G02990.1</a></td><td>0.9496</td><td>mitochondrial transcription termination factor family protein / mTERF family protein</td><td>OMAT4P001150</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420973001000i">AT4G09730.1</a></td><td>0.947813</td><td>DEAD/DEAH box helicase, putative</td><td>OMAT4P002320</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221987001000i">AT2G19870.1</a></td><td>0.942788</td><td>tRNA/rRNA methyltransferase (SpoU) family protein</td><td>OMAT2P003390</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222976001000i">AT2G29760.1</a></td><td>0.938504</td><td>pentatricopeptide (PPR) repeat-containing protein</td><td>OMAT2P006930</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320360001000i">AT3G03600.1</a></td><td>0.937658</td><td>RPS2 (RIBOSOMAL PROTEIN S2)</td><td>OMAT3P101090</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521222001000i">AT5G12220.1</a></td><td>0.934537</td><td>las1-like family protein</td><td>OMAT5P004185</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423179001000i">AT4G31790.1</a></td><td>0.933625</td><td>diphthine synthase, putative (DPH5)</td><td>OMAT4P010560</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127185001000i">AT1G71850.1</a></td><td>0.931601</td><td>ubiquitin thiolesterase</td><td>OMAT1P118190</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222381001000i">AT2G23810.1</a></td><td>-0.815176</td><td>TET8 (TETRASPANIN8)</td><td>OMAT2P104250</td><td>-</td><td>OMAT2P004810,OMAT2P004820</td><td>[OMAT2P004810]-, [OMAT2P004820]-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521683001000i">AT5G16830.1</a></td><td>-0.770277</td><td>SYP21 (SYNTAXIN OF PLANTS 21)</td><td>OMAT5P104830</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522090001000i">AT5G20900.1</a></td><td>-0.766201</td><td>JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)</td><td>OMAT5P007240</td><td>-</td><td>OMAT5P106255</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526213001000i">AT5G62130.1</a></td><td>-0.765762</td><td>Per1-like protein-related</td><td>OMAT5P116750</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526424002000i">AT5G64240.2</a></td><td>-0.761742</td><td>AtMC3 (metacaspase 3)</td><td>OMAT5P019730</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222545001000i">AT2G25450.1</a></td><td>-0.75445</td><td>2-oxoglutarate-dependent dioxygenase, putative</td><td>OMAT2P104640</td><td>-</td><td>OMAT2P005280</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423909001000i">AT4G39090.1</a></td><td>-0.751109</td><td>RD19 (RESPONSIVE TO DEHYDRATION 19)</td><td>OMAT4P111945</td><td>-</td><td>OMAT4P013580</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222680002000i">AT2G26800.2</a></td><td>-0.74788</td><td>hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative</td><td>OMAT2P105120</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321835001000i">AT3G18350.1</a></td><td>-0.746066</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120787001000i">AT1G07870.1</a></td><td>-0.7424</td><td>protein kinase family protein</td><td>OMAT1P102400</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222054001000i/AT2G20540.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 8.81e-32</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>8.81e-32 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>15/200</td><td>11.71</td><td>2.73e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>15/200</td><td>11.34</td><td>4.50e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>18/200</td><td>8.13</td><td>1.25e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>24/200</td><td>2.82</td><td>1.50e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>40/200</td><td>2.06</td><td>3.41e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>40/200</td><td>2.02</td><td>5.52e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>40/200</td><td>1.96</td><td>1.03e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G20540&keyword=gene%20expression">1.29E-17</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>35/200</td><td>2.07</td><td>1.17e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>19/200</td><td>2.62</td><td>4.42e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009790</td><td>embryonic development</td><td>10/200</td><td>3.79</td><td>7.81e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0044271</td><td>cellular nitrogen compound biosynthetic process</td><td>10/200</td><td>3.78</td><td>7.97e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>29/200</td><td>1.93</td><td>2.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044237</td><td>cellular metabolic process</td><td>68/200</td><td>1.44</td><td>3.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>54/200</td><td>1.53</td><td>3.40e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>70/200</td><td>1.41</td><td>4.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006996</td><td>organelle organization</td><td>10/200</td><td>3.00</td><td>5.80e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>55/200</td><td>1.42</td><td>1.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>10/200</td><td>2.20</td><td>6.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>16/200</td><td>1.78</td><td>9.08e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>11/200</td><td>2.00</td><td>9.82e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>114/200</td><td>2.14</td><td>2.81e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>103/200</td><td>2.23</td><td>5.69e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>108/200</td><td>2.12</td><td>1.94e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>33/200</td><td>5.54</td><td>2.03e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>33/200</td><td>5.54</td><td>2.03e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0043231</td><td>intracellular membrane-bounded organelle</td><td>91/200</td><td>2.07</td><td>3.72e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043227</td><td>membrane-bounded organelle</td><td>91/200</td><td>2.07</td><td>3.75e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005730</td><td>nucleolus</td><td>17/200</td><td>9.92</td><td>1.67e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>81/200</td><td>2.16</td><td>2.21e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044444</td><td>cytoplasmic part</td><td>77/200</td><td>2.22</td><td>3.29e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0009536</td><td>plastid</td><td>50/200</td><td>2.71</td><td>1.44e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>18/200</td><td>6.64</td><td>4.21e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>18/200</td><td>6.62</td><td>4.37e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0031981</td><td>nuclear lumen</td><td>17/200</td><td>7.03</td><td>5.21e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>18/200</td><td>5.16</td><td>2.79e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044428</td><td>nuclear part</td><td>17/200</td><td>5.11</td><td>8.19e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>14/200</td><td>5.46</td><td>5.45e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>127/200</td><td>1.39</td><td>1.46e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>35/200</td><td>2.44</td><td>2.76e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>35/200</td><td>2.44</td><td>2.81e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>10/200</td><td>6.16</td><td>8.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005634</td><td>nucleus</td><td>31/200</td><td>1.98</td><td>8.47e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>16/200</td><td>2.50</td><td>2.60e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0003676</td><td>nucleic acid binding</td><td>54/200</td><td>2.28</td><td>1.36e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0003723</td><td>RNA binding</td><td>26/200</td><td>3.75</td><td>1.82e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>14/200</td><td>6.47</td><td>5.89e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0008168</td><td>methyltransferase activity</td><td>10/200</td><td>7.66</td><td>9.36e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0016741</td><td>transferase activity, transferring one-carbon groups</td><td>10/200</td><td>7.59</td><td>1.03e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0000166</td><td>nucleotide binding</td><td>34/200</td><td>2.57</td><td>1.15e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0032555</td><td>purine ribonucleotide binding</td><td>22/200</td><td>2.24</td><td>1.38e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0032553</td><td>ribonucleotide binding</td><td>22/200</td><td>2.24</td><td>1.38e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0017076</td><td>purine nucleotide binding</td><td>22/200</td><td>2.12</td><td>3.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016818</td><td>hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides</td><td>12/200</td><td>2.70</td><td>5.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016817</td><td>hydrolase activity, acting on acid anhydrides</td><td>12/200</td><td>2.67</td><td>6.36e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>26/200</td><td>1.66</td><td>3.78e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0030554</td><td>adenyl nucleotide binding</td><td>17/200</td><td>1.88</td><td>4.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0001883</td><td>purine nucleoside binding</td><td>17/200</td><td>1.88</td><td>4.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0001882</td><td>nucleoside binding</td><td>17/200</td><td>1.87</td><td>4.55e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>176/200</td><td>2.05</td><td>2.06e-41</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>170/200</td><td>2.09</td><td>1.90e-39</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>163/200</td><td>2.14</td><td>2.32e-37</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>175/200</td><td>1.90</td><td>7.41e-36</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>164/200</td><td>1.99</td><td>2.76e-33</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>176/200</td><td>1.80</td><td>1.45e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>176/200</td><td>1.79</td><td>3.26e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>176/200</td><td>1.79</td><td>3.26e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>174/200</td><td>1.80</td><td>1.27e-31</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>166/200</td><td>1.89</td><td>3.87e-31</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>171/200</td><td>1.81</td><td>1.21e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>171/200</td><td>1.81</td><td>1.21e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>177/200</td><td>1.73</td><td>2.90e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>178/200</td><td>1.71</td><td>3.56e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>155/200</td><td>2.01</td><td>5.39e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>181/200</td><td>1.67</td><td>6.03e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>178/200</td><td>1.70</td><td>9.14e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>165/200</td><td>1.83</td><td>1.00e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>167/200</td><td>1.81</td><td>1.07e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>162/200</td><td>1.84</td><td>1.38e-27</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>156/200</td><td>1.86</td><td>3.84e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>156/200</td><td>1.85</td><td>8.23e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>153/200</td><td>1.82</td><td>5.18e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>158/200</td><td>1.76</td><td>1.27e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>136/200</td><td>1.85</td><td>6.00e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>138/200</td><td>1.78</td><td>1.36e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>140/200</td><td>1.74</td><td>3.24e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>113/200</td><td>1.36</td><td>6.51e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000293</td><td>guard cell</td><td>20/200</td><td>1.86</td><td>2.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000351</td><td>guard mother cell</td><td>20/200</td><td>1.85</td><td>2.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000070</td><td>meristemoid</td><td>20/200</td><td>1.85</td><td>2.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0006016</td><td>leaf epidermis</td><td>20/200</td><td>1.80</td><td>3.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0006035</td><td>shoot epidermis</td><td>20/200</td><td>1.79</td><td>4.28e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0000349</td><td>epidermal initial</td><td>20/200</td><td>1.77</td><td>4.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0004011</td><td>initial cell</td><td>20/200</td><td>1.76</td><td>4.98e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0004010</td><td>meristematic cell</td><td>20/200</td><td>1.76</td><td>5.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0004013</td><td>epidermal cell</td><td>20/200</td><td>1.68</td><td>8.57e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>176/200</td><td>2.12</td><td>6.15e-44</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>173/200</td><td>2.17</td><td>7.76e-44</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>174/200</td><td>2.11</td><td>1.95e-42</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>170/200</td><td>2.07</td><td>7.63e-39</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>176/200</td><td>1.95</td><td>3.04e-38</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>176/200</td><td>1.95</td><td>6.06e-38</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>168/200</td><td>1.98</td><td>5.78e-35</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>166/200</td><td>1.97</td><td>1.08e-33</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>166/200</td><td>1.97</td><td>1.11e-33</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>179/200</td><td>1.76</td><td>1.56e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>176/200</td><td>1.78</td><td>5.94e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>157/200</td><td>2.04</td><td>8.81e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>157/200</td><td>2.04</td><td>9.48e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>179/200</td><td>1.71</td><td>1.30e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>170/200</td><td>1.75</td><td>4.76e-28</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr002885</td><td>-</td><td>23/200</td><td>8.21</td><td>1.21e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pentatricopeptide</td><td>-</td><td>23/200</td><td>7.92</td><td>2.68e-15</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G20540&keyword=pentatricopeptide">0</a></td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>chloroplast</td><td>-</td><td>52/200</td><td>2.94</td><td>1.98e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>20/200</td><td>7.58</td><td>3.36e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleolus</td><td>-</td><td>15/200</td><td>11.04</td><td>6.81e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>processing</td><td>-</td><td>15/200</td><td>10.57</td><td>1.32e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>20/200</td><td>6.62</td><td>4.30e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>translation</td><td>-</td><td>23/200</td><td>4.64</td><td>2.17e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>transducin</td><td>-</td><td>10/200</td><td>13.63</td><td>2.22e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>repeat</td><td>-</td><td>38/200</td><td>2.93</td><td>5.83e-10</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G20540&keyword=repeat">0</a></td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleotide</td><td>-</td><td>25/200</td><td>3.93</td><td>1.35e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>15/200</td><td>5.35</td><td>2.74e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>24/200</td><td>3.27</td><td>9.79e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr017986</td><td>-</td><td>10/200</td><td>7.46</td><td>1.23e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr001680</td><td>-</td><td>10/200</td><td>6.73</td><td>3.43e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr015943</td><td>-</td><td>10/200</td><td>6.65</td><td>3.87e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr011046</td><td>-</td><td>10/200</td><td>6.44</td><td>5.29e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>helicase</td><td>-</td><td>10/200</td><td>6.42</td><td>5.49e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>structural</td><td>-</td><td>15/200</td><td>4.28</td><td>5.64e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>defective</td><td>-</td><td>12/200</td><td>4.90</td><td>1.28e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleic</td><td>-</td><td>20/200</td><td>3.06</td><td>2.85e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>mitochondrial</td><td>-</td><td>11/200</td><td>4.88</td><td>3.25e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>motif</td><td>-</td><td>16/200</td><td>3.29</td><td>8.86e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>intracellular</td><td>-</td><td>16/200</td><td>3.10</td><td>1.91e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>37/200</td><td>1.92</td><td>3.71e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>16/200</td><td>2.92</td><td>4.10e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>18/200</td><td>2.59</td><td>7.68e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>41/200</td><td>1.78</td><td>8.60e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>26/200</td><td>1.92</td><td>4.79e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>containing</td><td>-</td><td>30/200</td><td>1.80</td><td>5.86e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G20540&keyword=containing">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>complex</td><td>-</td><td>17/200</td><td>2.01</td><td>2.22e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>small</td><td>-</td><td>10/200</td><td>2.48</td><td>2.59e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>14/200</td><td>1.96</td><td>5.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>75/200</td><td>1.25</td><td>8.35e-03</td><td>-</td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
without_OMAT_gene